Please let us know any suggestion and advice as you are using DRSP.

Jilong Liu:  liujilong[at]yeah[dot].net

Yang Cao:  cy_scu[at]yeah[dot].net


In this work we have also used following programs or service:

  • DSSP: A series of PDB related databases for everyday needs. Joosten RP, Te Beek TAH, Krieger E, Hekkelman ML, Hooft RWW, Schneider R, Sander C, Vriend G, NAR 2010; doi: 10.1093/nar/gkq1105.
  • NACCESS: Hubbard S J, Thornton J M. Naccess[J]. Computer Program, Department of Biochemistry and Molecular Biology, University College London, 1993, 2(1).
  • NDRD: Daniel Ting, Guoli Wang, Maxim Shapovalov, Rajib Mitra, Michael I. Jordan, Roland L. Dunbrack, Jr. Neighbor-dependent Ramachandran probability distributions of amino acids developed from a hierarchical Dirichlet process model. PLOS Comp. Biol. (April 2010).
  • CISRR: Cao Y, Song L, Miao Z, Hu Y, Tian L, Jiang T. Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation. Bioinformatics 27(6):785-790, 2011

If you are interested at our work, please reference: