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Please Try The New Version: PDBassistant

Introduction:

  • ComplexAssemble: Assemble multiple domains to be a protein complex by refering to a complex template.
  • StructureAlign: superimposing query protein on reference protein (supporting multiple chains).
  • Assembly: generating biomolecules from monomers to assemblies (supporting HETATM).
  • PDB2FAS: extracting protein sequences from a PDB file (residues in the ATOM. supporting multiple chains).
  • AddH: adding hydrogen atoms on a given protein (CHARMM22 defined hydrogen atoms).
  • SplitChain: split the protein complex into chains.

    • Please Cite:
    PDB-assistant: an integrated Web tool for analyzing and editing PDBs. Front. Comput. Sci., 2025, 19(3): 193910

    软件简介:

  • ComplexAssemble:
               根据同源结构，把多个单链结构组装成完整复合物三维结构.
  • StructureAlign:
               对两个蛋白质进行三维结构的叠加，评估结构相似性.
  • Assembly:
               根据PDB的多聚参数，由蛋白质单体结构合成出多聚物结构.
  • PDB2FAS:
               从蛋白质PDB文件提取序列信息（支持复合物结构）.
  • AddH:
               根据CHARMM22力场参数，给蛋白质三维结构加氢原子.
  • SplitChain:
               把复合物结构拆解成单链结构.